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Crystal structure of the ENDONUCLEASE_V (BSU36170) from bacillus subtilis, northeast structural genomics consortium target SR624

Analyse Crystal structure of the ENDONUCLEASE_V (BSU36170) from bacillus subtilis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3GA2
Type: protein
Length: 237 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endonuclease V
EC: 3.1.21.7
UniProt: P96724
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endonuclease V (EC 3.1.21.7)	protein	237	28% helix, 27% strand	P96724

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	185	0.52	0.78	28	empty
2	88	0.40	0.77	18	empty

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

3GA2 · Crystal structure of the Endonuclease_V (BSU36170) from Bacillus subtilis, Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
P96724 · AlphaFold monomer V2.0 prediction for endonuclease V (P96724) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P96724
Elsewhere: RCSB PDB 3GA2 · PDBe 3GA2 · UniProt P96724

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