Research workbench
Crystal structure of the C-ala domain from aquifex aeolicus alanyl-tRNA synthetase
Analyse Crystal structure of the C-ala domain from aquifex aeolicus alanyl-tRNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3G98
- Type
- protein
- Length
- 222 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alanyl-tRNA synthetase
- EC
- 6.1.1.7
- UniProt
- O67323
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Alanyl-tRNA synthetase (EC 6.1.1.7) | protein | 111 | 37% helix, 36% strand | O67323 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 243 | 0.51 | 0.75 | 39 | empty |
Interfaces
1 interface between chains.
- A–B · 246 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 3G98 · Crystal Structure of the C-Ala domain from Aquifex aeolicus alanyl-tRNA synthetase · the same entry in another collection · chain A against A, TM-score 1.00
- O67323 · AlphaFold monomer V2.0 prediction for alanine--tRNA ligase (O67323) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O67323
- Elsewhere: RCSB PDB 3G98 · PDBe 3G98 · UniProt O67323
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