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Crystal structure of protein of unknown function with cystatin-like fold (NP_639274.1) from xanthomonas campestris at 1.90 a resolution

Analyse Crystal structure of protein of unknown function with cystatin-like fold… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3G8Z
Type: protein
Length: 129 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein of unknown function with cystatin-like fold
UniProt: Q8P3Y3
Ligands: CL
Pockets: 1 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein of unknown function with cystatin-like fold	protein	129	33% helix, 46% strand	Q8P3Y3

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	165	0.68	0.87	31	GOL

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

3G8Z · Crystal structure of protein of unknown function with cystatin-like fold (NP_639274.1)… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8P3Y3
Elsewhere: RCSB PDB 3G8Z · PDBe 3G8Z · UniProt Q8P3Y3

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