Research workbench
Crystal structure of murine natural killer cell receptor, LY49L4
Analyse Crystal structure of murine natural killer cell receptor, LY49L4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3G8K
- Type
- protein
- Length
- 254 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lectin-related nk cell receptor LY49L1
- UniProt
- Q9JIP9
- Pockets
- 2 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lectin-related nk cell receptor LY49L1 | protein | 127 | 23% helix, 35% strand | Q9JIP9 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.40 | 0.76 | 19 | empty |
| 2 | 92 | 0.39 | 0.77 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 610 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 3G8K · Crystal structure of murine natural killer cell receptor, Ly49L4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9JIP9
- Elsewhere: RCSB PDB 3G8K · PDBe 3G8K · UniProt Q9JIP9
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