Research workbench
Crystal structure of an outer membrane protein, part of a putative carbohydrate binding complex (BT_1022) from bacteroides thetaiotaomicron vpi-5482 at 1.93 a resolution
Analyse Crystal structure of an outer membrane protein, part of a putative carbohydrate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3G6I
- Type
- protein
- Length
- 200 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative outer membrane protein, part of carbohydrate binding complex
- UniProt
- Q8A8Z5
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative outer membrane protein, part of carbohydrate binding complex | protein | 200 | 79% helix, 0% strand | Q8A8Z5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.43 | 0.79 | 12 | empty |
| 2 | 122 | 0.39 | 0.74 | 20 | empty |
| 3 | 58 | 0.34 | 0.77 | 18 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3G6I · Crystal structure of an outer membrane protein, part of a putative carbohydrate binding… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A8Z5
- Elsewhere: RCSB PDB 3G6I · PDBe 3G6I · UniProt Q8A8Z5
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