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Crystallographic analysis of cytochrome P450 CYP121

Analyse Crystallographic analysis of cytochrome P450 CYP121 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3G5H
Type: protein
Length: 394 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome P450 121
EC: 1.14.-.-
UniProt: P0A514
Ligands: HEM, YTT, SO4
Pockets: 4 · best druggability 0.87

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome P450 121 (EC 1.14.-.-)	protein	394	52% helix, 10% strand	P0A514

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
YTT · (3S,6S)-3,6-bis(4-hydroxybenzyl)piperazine-2,5-dione · ligand · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	899	0.87	0.89	86	HEM, YTT, SO4
2	64	0.42	0.81	18	empty
3	56	0.39	0.81	17	empty
4	55	0.27	0.74	15	empty

Compared structures

3G5H · Crystallographic analysis of cytochrome P450 cyp121 · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A514
Elsewhere: RCSB PDB 3G5H · PDBe 3G5H · UniProt P0A514

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