Research workbench
Structure of putative oorc subunit of 2-OXOGLUTARATE:ACCEPTOR oxidoreductase from campylobacter jejuni
Analyse Structure of putative oorc subunit of 2-OXOGLUTARATE:ACCEPTOR oxidoreductase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3G2E
- Type
- protein
- Length
- 735 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oorc subunit of 2-OXOGLUTARATE:ACCEPTOR oxidoreductase
- UniProt
- Q0PAX8
- Pockets
- 7 · best druggability 0.84
Structure
x-ray diffraction · 3 distinct chains · 45% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oorc subunit of 2-OXOGLUTARATE:ACCEPTOR oxidoreductase | protein | 184 | 46% helix, 23% strand | Q0PAX8 |
| B, D | Oorc subunit of 2-OXOGLUTARATE:ACCEPTOR oxidoreductase | protein | 185 | 44% helix, 23% strand | Q0PAX8 |
| C | Oorc subunit of 2-OXOGLUTARATE:ACCEPTOR oxidoreductase | protein | 181 | 46% helix, 24% strand | Q0PAX8 |
Ligands and binding sites
- GOL · Glycerol · additive · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1040 | 0.84 | 0.85 | 95 | empty |
| 2 | 876 | 0.78 | 0.81 | 80 | empty |
| 3 | 318 | 0.52 | 0.74 | 34 | empty |
| 4 | 125 | 0.49 | 0.80 | 19 | empty |
| 5 | 93 | 0.34 | 0.74 | 22 | empty |
Interfaces
6 interfaces between chains.
- A–B · 2767 Ų buried · 62 hydrogen bonds · protein-protein
- A–C · 1267 Ų buried · 18 hydrogen bonds · protein-protein
- B–D · 1245 Ų buried · 20 hydrogen bonds · protein-protein
- C–D · 523 Ų buried · 8 hydrogen bonds · protein-protein
- B–C · 215 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3G2E · Structure of putative OORC subunit of 2-oxoglutarate:acceptor oxidoreductase from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0PAX8
- Elsewhere: RCSB PDB 3G2E · PDBe 3G2E · UniProt Q0PAX8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.