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Structure of S. pombe POP2P - MG2+ and MN2+ bound form

Analyse Structure of S. pombe POP2P - MG2+ and MN2+ bound form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3G10
Type: protein
Length: 252 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CCR4-not complex subunit CAF1
UniProt: O74856
Ligands: MG, MN
Pockets: 2 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	CCR4-not complex subunit CAF1	protein	252	44% helix, 13% strand	O74856

Ligands and binding sites

MG · Magnesium ion · metal · chains A
MN · Manganese (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	293	0.56	0.76	33	MG, MN
2	72	0.41	0.79	23	empty

Compared structures

3G10 · Structure of S. pombe Pop2p - Mg2+ and Mn2+ bound form · the same entry in another collection · chain A against A, TM-score 1.00
O74856 · AlphaFold monomer V2.0 prediction for POLY(A) ribonuclease POP2 (O74856) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O74856
Elsewhere: RCSB PDB 3G10 · PDBe 3G10 · UniProt O74856

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