Research workbench
Crystal structure of cysteine desulfuration protein sufe from salmonella typhimurium LT2
Analyse Crystal structure of cysteine desulfuration protein sufe from salmonella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3G0M
- Type
- protein
- Length
- 138 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cysteine desulfuration protein sufe
- UniProt
- Q8ZPQ1
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cysteine desulfuration protein sufe | protein | 138 | 56% helix, 12% strand | Q8ZPQ1 |
Ligands and binding sites
- BME · Beta-mercaptoethanol · additive · chains A
- EDO · 1,2-ethanediol · additive · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.35 | 0.79 | 14 | empty |
Modifications
Observed in the structure: 1 covalent (additive adduct).
Compared structures
- 3G0M · Crystal structure of cysteine desulfuration protein SufE from Salmonella typhimurium LT2 · the same entry in another collection · chain A against A, TM-score 1.00
- Q8ZPQ1 · AlphaFold monomer V2.0 prediction for cysteine desulfuration protein sufe (Q8ZPQ1) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZPQ1
- Elsewhere: RCSB PDB 3G0M · PDBe 3G0M · UniProt Q8ZPQ1
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