Research workbench
Tsar low resolution crystal structure, tetragonal form
Analyse Tsar low resolution crystal structure, tetragonal form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FZJ
- Type
- protein
- Length
- 2,960 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysr type regulator of tsambcd
- UniProt
- P94678
- Pockets
- 20 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J | Lysr type regulator of tsambcd | protein | 296 | 45% helix, 21% strand | P94678 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 664 | 0.74 | 0.80 | 66 | empty |
| 2 | 688 | 0.74 | 0.80 | 66 | empty |
| 3 | 714 | 0.74 | 0.79 | 70 | empty |
| 4 | 636 | 0.73 | 0.80 | 61 | empty |
| 5 | 683 | 0.73 | 0.79 | 71 | empty |
Interfaces
17 interfaces between chains.
- E–F · 1513 Ų buried · 8 hydrogen bonds · protein-protein
- I–J · 1481 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 1465 Ų buried · 13 hydrogen bonds · protein-protein
- F–G · 1451 Ų buried · 16 hydrogen bonds · protein-protein
- A–B · 1391 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 3FZJ · TsaR low resolution crystal structure, tetragonal form · the same entry in another collection · chain J against J, TM-score 1.00
- P94678 · AlphaFold monomer V2.0 prediction for hth-type transcriptional regulator tsar (P94678) · a predicted model of the same protein · chain A against A, TM-score 0.71
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P94678
- Elsewhere: RCSB PDB 3FZJ · PDBe 3FZJ · UniProt P94678
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