Research workbench
Crystal structure of divergent enolase from oceanobacillus iheyensis complexed with mg
Analyse Crystal structure of divergent enolase from oceanobacillus iheyensis complexed… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FYY
- Type
- protein
- Length
- 750 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Muconate cycloisomerase
- UniProt
- Q8EMJ9
- Ligands
- MG
- Pockets
- 6 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Muconate cycloisomerase | protein | 375 | 39% helix, 21% strand | Q8EMJ9 |
Ligands and binding sites
- MG · Magnesium ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 523 | 0.65 | 0.76 | 52 | empty |
| 2 | 275 | 0.57 | 0.77 | 28 | empty |
| 3 | 157 | 0.45 | 0.76 | 19 | empty |
| 4 | 63 | 0.35 | 0.77 | 14 | empty |
| 5 | 75 | 0.34 | 0.76 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 1262 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 3FYY · Crystal structure of divergent enolase from Oceanobacillus iheyensis complexed with Mg · the same entry in another collection · chain A against A, TM-score 1.00
- Q8EMJ9 · AlphaFold monomer V2.0 prediction for galactarate dehydratase (D-threo-forming) (Q8EMJ9) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EMJ9
- Elsewhere: RCSB PDB 3FYY · PDBe 3FYY · UniProt Q8EMJ9
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