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Crystal structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein HFX_CASS3

Analyse Crystal structure from the mobile metagenome of cole harbour salt marsh… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3FYN
Type: protein
Length: 152 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Integron gene cassette protein HFX_CASS3
UniProt: B0BFQ1
Ligands: MG
Pockets: 3 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Integron gene cassette protein HFX_CASS3	protein	152	40% helix, 24% strand	B0BFQ1

Ligands and binding sites

MG · Magnesium ion · metal · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	61	0.37	0.78	13	empty
2	89	0.32	0.73	23	empty
3	63	0.30	0.74	16	ACT

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

3FYN · Crystal structure from the mobile metagenome of Cole Harbour Salt Marsh: Integron… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B0BFQ1
Elsewhere: RCSB PDB 3FYN · PDBe 3FYN · UniProt B0BFQ1

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