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Crystal structure of the cbs domains from the bacillus subtilis ccpn repressor

Analyse Crystal structure of the cbs domains from the bacillus subtilis ccpn repressor in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3FV6
Type: protein
Length: 291 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Yqzb protein
UniProt: O34994
Pockets: 2 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 40% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Yqzb protein	protein	145	38% helix, 26% strand	O34994
B	Yqzb protein	protein	146	42% helix, 27% strand	O34994

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	579	0.72	0.80	61	empty
2	67	0.34	0.76	15	empty

Interfaces

1 interface between chains.

A–B · 1984 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

3FV6 · Crystal Structure of the CBS domains from the Bacillus subtilis CcpN repressor · the same entry in another collection · chain A against A, TM-score 1.00
O34994 · AlphaFold monomer V2.0 prediction for transcriptional repressor ccpn (O34994) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O34994
Elsewhere: RCSB PDB 3FV6 · PDBe 3FV6 · UniProt O34994

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