Research workbench
Crystal structure of oppa in a open conformation
Analyse Crystal structure of oppa in a open conformation in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FTO
- Type
- protein
- Length
- 559 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oligopeptide-binding protein oppa
- UniProt
- A2RJ53
- Pockets
- 4 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oligopeptide-binding protein oppa | protein | 559 | 29% helix, 23% strand | A2RJ53 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 980 | 0.77 | 0.79 | 65 | empty |
| 2 | 261 | 0.74 | 0.88 | 40 | empty |
| 3 | 59 | 0.45 | 0.84 | 18 | empty |
| 4 | 57 | 0.33 | 0.77 | 19 | empty |
Modifications
Observed in the structure: 13 modified (engineered).
Compared structures
- 3FTO · Crystal structure of OppA in a open conformation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A2RJ53
- Elsewhere: RCSB PDB 3FTO · PDBe 3FTO · UniProt A2RJ53
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