Research workbench

Crystal structure of NTF2-like protein of unknown function in nutrient uptake (YP_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a resolution

Analyse Crystal structure of NTF2-like protein of unknown function in nutrient uptake… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3FSD
Type: protein
Length: 121 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NTF2-like protein of unknown function in nutrient uptake
UniProt: Q2RRQ9
Ligands: UNL
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NTF2-like protein of unknown function in nutrient uptake	protein	121	25% helix, 55% strand	Q2RRQ9

Ligands and binding sites

UNL · Unknown ligand · ligand · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	251	0.75	0.88	27	UNL

Modifications

Observed in the structure: 1 modified (engineered).

Compared structures

3FSD · Crystal structure of NTF2-like protein of unknown function in nutrient uptake… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2RRQ9
Elsewhere: RCSB PDB 3FSD · PDBe 3FSD · UniProt Q2RRQ9

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.