Research workbench
Crystal structure of CGL0159 from corynebacterium glutamicum (brevibacterium flavum). northeast structural genomics target CGR115
Analyse Crystal structure of CGL0159 from corynebacterium glutamicum (brevibacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FOK
- Type
- protein
- Length
- 2,950 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein CGL0159
- UniProt
- Q8NTZ2
- Pockets
- 20 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J | Uncharacterized protein CGL0159 | protein | 295 | 38% helix, 18% strand | Q8NTZ2 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 498 | 0.73 | 0.82 | 46 | empty |
| 2 | 538 | 0.73 | 0.81 | 50 | empty |
| 3 | 585 | 0.72 | 0.80 | 48 | empty |
| 4 | 605 | 0.71 | 0.79 | 55 | empty |
| 5 | 608 | 0.69 | 0.78 | 65 | empty |
Interfaces
19 interfaces between chains.
- C–E · 1608 Ų buried · 22 hydrogen bonds · protein-protein
- I–J · 1605 Ų buried · 25 hydrogen bonds · protein-protein
- C–D · 1605 Ų buried · 21 hydrogen bonds · protein-protein
- B–F · 1598 Ų buried · 21 hydrogen bonds · protein-protein
- F–G · 1597 Ų buried · 21 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 130 modified (engineered).
Compared structures
- 3FOK · Crystal Structure of Cgl0159 From Corynebacterium glutamicum (Brevibacterium flavum).… · the same entry in another collection · chain F against F, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NTZ2
- Elsewhere: RCSB PDB 3FOK · PDBe 3FOK · UniProt Q8NTZ2
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