Research workbench
Fitting of GP18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 contracted tail
Analyse Fitting of GP18M crystal structure into 3D cryo-EM reconstruction of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FOI
- Type
- protein
- Length
- 2,874 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tail sheath protein GP18
- UniProt
- P13332
- Pockets
- 20 · best druggability 0.54
Structure
electron microscopy · 1 distinct chain · 24% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Tail sheath protein GP18 | protein | 479 | 24% helix, 27% strand | P13332 |
Pockets
20 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 172 | 0.54 | 0.79 | 34 | empty |
| 2 | 104 | 0.50 | 0.81 | 17 | empty |
| 3 | 109 | 0.48 | 0.80 | 18 | empty |
| 4 | 108 | 0.47 | 0.80 | 17 | empty |
| 5 | 105 | 0.47 | 0.79 | 17 | empty |
Compared structures
- 3FOI · Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13332
- Elsewhere: RCSB PDB 3FOI · PDBe 3FOI · UniProt P13332
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