Research workbench
Crystal structure of LP_1913 protein from lactobacillus plantarum, northeast structural genomics consortium target LPR140B
Analyse Crystal structure of LP_1913 protein from lactobacillus plantarum, northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FLH
- Type
- protein
- Length
- 335 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein LP_1913
- UniProt
- Q88VW8
- Ligands
- BR
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 3 distinct chains · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein LP_1913 | protein | 119 | 45% helix, 19% strand | Q88VW8 |
| B | Uncharacterized protein LP_1913 | protein | 121 | 45% helix, 17% strand | Q88VW8 |
| C | Uncharacterized protein LP_1913 | protein | 95 | 44% helix, 19% strand | Q88VW8 |
Ligands and binding sites
- BR · Bromide ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 522 | 0.68 | 0.78 | 60 | BR |
| 2 | 164 | 0.51 | 0.78 | 26 | empty |
| 3 | 151 | 0.49 | 0.78 | 14 | empty |
Interfaces
3 interfaces between chains.
- A–B · 876 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 691 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 632 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 3FLH · Crystal structure of lp_1913 protein from Lactobacillus plantarum,Northeast Structural… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q88VW8
- Elsewhere: RCSB PDB 3FLH · PDBe 3FLH · UniProt Q88VW8
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