Research workbench
SE_1780 protein of unknown function from staphylococcus epidermidis.
Analyse SE_1780 protein of unknown function from staphylococcus epidermidis. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FLE
- Type
- protein
- Length
- 486 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SE_1780 protein
- UniProt
- Q8CRJ5
- Pockets
- 4 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | SE_1780 protein | protein | 243 | 33% helix, 23% strand | Q8CRJ5 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.48 | 0.78 | 35 | empty |
| 2 | 121 | 0.41 | 0.75 | 25 | empty |
| 3 | 104 | 0.38 | 0.75 | 28 | empty |
| 4 | 91 | 0.31 | 0.73 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 308 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 3FLE · SE_1780 protein of unknown function from Staphylococcus epidermidis. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8CRJ5
- Elsewhere: RCSB PDB 3FLE · PDBe 3FLE · UniProt Q8CRJ5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.