Research workbench
Crystal structure of rubisco-like protein from bacillus cereus atcc 14579
Analyse Crystal structure of rubisco-like protein from bacillus cereus atcc 14579 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FK4
- Type
- protein
- Length
- 779 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rubisco-like protein
- EC
- 5.3.2.-
- UniProt
- Q819E8
- Pockets
- 5 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rubisco-like protein (EC 5.3.2.-) | protein | 388 | 46% helix, 18% strand | Q819E8 |
| B | Rubisco-like protein (EC 5.3.2.-) | protein | 391 | 47% helix, 17% strand | Q819E8 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 126 | 0.79 | 0.97 | 40 | empty |
| 2 | 946 | 0.75 | 0.78 | 126 | empty |
| 3 | 437 | 0.67 | 0.79 | 41 | empty |
| 4 | 294 | 0.55 | 0.76 | 41 | empty |
| 5 | 59 | 0.34 | 0.78 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 2676 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 3FK4 · Crystal structure of RuBisCO-like protein from Bacillus Cereus ATCC 14579 · the same entry in another collection · chain A against A, TM-score 1.00
- Q819E8 · AlphaFold monomer V2.0 prediction for 2,3-diketo-5-methylthiopentyl-1-phosphate enolase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q819E8
- Elsewhere: RCSB PDB 3FK4 · PDBe 3FK4 · UniProt Q819E8
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