Research workbench
Crystal structure of a probable MUTT1 protein from bifidobacterium adolescentis
Analyse Crystal structure of a probable MUTT1 protein from bifidobacterium adolescentis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FJY
- Type
- protein
- Length
- 683 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable MUTT1 protein
- UniProt
- A0ZZM4
- Pockets
- 9 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 41% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable MUTT1 protein | protein | 331 | 42% helix, 27% strand | A0ZZM4 |
| B | Probable MUTT1 protein | protein | 352 | 39% helix, 28% strand | A0ZZM4 |
Ligands and binding sites
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 246 | 0.72 | 0.87 | 35 | empty |
| 2 | 262 | 0.70 | 0.85 | 36 | empty |
| 3 | 115 | 0.55 | 0.83 | 20 | empty |
| 4 | 147 | 0.54 | 0.81 | 24 | empty |
| 5 | 206 | 0.50 | 0.76 | 35 | empty |
Interfaces
1 interface between chains.
- A–B · 1079 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 3FJY · Crystal structure of a probable MutT1 protein from Bifidobacterium adolescentis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0ZZM4
- Elsewhere: RCSB PDB 3FJY · PDBe 3FJY · UniProt A0ZZM4
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