Research workbench
Ascaris suum carboxypeptidase inhibitor in complex with human carboxypeptidase A1
Analyse Ascaris suum carboxypeptidase inhibitor in complex with human carboxypeptidase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FJU
- Type
- protein
- Length
- 372 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carboxypeptidase A1; Carboxypeptidase a inhibitor
- EC
- 3.4.17.1
- UniProt
- P15085, P19399
- Ligands
- ZN, NA
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carboxypeptidase A1 (EC 3.4.17.1) | protein | 307 | 39% helix, 18% strand | P15085 |
| B | Carboxypeptidase a inhibitor | protein | 65 | 28% helix, 22% strand | P19399 |
Ligands and binding sites
- ZN · Zinc ion · metal · 10 copies · chains A, B
- NA · Sodium ion · metal · chains A
- ACT · Acetate ion · additive · 6 copies · chains A, B
- CAC · Cacodylate ion · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.28 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 722 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 3FJU · Ascaris suum carboxypeptidase inhibitor in complex with human carboxypeptidase A1 · the same entry in another collection · chain A against A, TM-score 1.00
- P15085 · AlphaFold monomer V2.0 prediction for carboxypeptidase A1 (P15085) · a predicted model of the same protein · chain A against A, TM-score 1.00
- P19399 · AlphaFold monomer V2.0 prediction for carboxypeptidase a inhibitor (P19399) · a predicted model of the same protein · chain B against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15085
- Every structure of UniProt P19399
- Elsewhere: RCSB PDB 3FJU · PDBe 3FJU · UniProt P15085 · UniProt P19399
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