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Ascaris suum carboxypeptidase inhibitor in complex with human carboxypeptidase A1

Analyse Ascaris suum carboxypeptidase inhibitor in complex with human carboxypeptidase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3FJU
Type
protein
Length
372 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Carboxypeptidase A1; Carboxypeptidase a inhibitor
EC
3.4.17.1
UniProt
P15085, P19399
Ligands
ZN, NA
Pockets
1 · best druggability 0.28

Structure

x-ray diffraction · 2 distinct chains · 37% helix, 18% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACarboxypeptidase A1 (EC 3.4.17.1)protein30739% helix, 18% strandP15085
BCarboxypeptidase a inhibitorprotein6528% helix, 22% strandP19399

Ligands and binding sites

  • ZN · Zinc ion · metal · 10 copies · chains A, B
  • NA · Sodium ion · metal · chains A
  • ACT · Acetate ion · additive · 6 copies · chains A, B
  • CAC · Cacodylate ion · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
1500.280.7515empty

Interfaces

1 interface between chains.

  • A–B · 722 Ų buried · 17 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

  • 3FJU · Ascaris suum carboxypeptidase inhibitor in complex with human carboxypeptidase A1 · the same entry in another collection · chain A against A, TM-score 1.00
  • P15085 · AlphaFold monomer V2.0 prediction for carboxypeptidase A1 (P15085) · a predicted model of the same protein · chain A against A, TM-score 1.00
  • P19399 · AlphaFold monomer V2.0 prediction for carboxypeptidase a inhibitor (P19399) · a predicted model of the same protein · chain B against A, TM-score 0.89

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