Research workbench
Crystal structure of a putative biosynthetic protein with rmlc-like cupin fold (REUT_B4087) from ralstonia eutropha JMP134 at 1.90 a resolution
Analyse Crystal structure of a putative biosynthetic protein with rmlc-like cupin fold… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FJS
- Type
- protein
- Length
- 419 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein with rmlc-like cupin fold
- UniProt
- Q46TU1
- Pockets
- 5 · best druggability 0.83
Structure
x-ray diffraction · 3 distinct chains · 6% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein with rmlc-like cupin fold | protein | 105 | 6% helix, 54% strand | Q46TU1 |
| C | Uncharacterized protein with rmlc-like cupin fold | protein | 107 | 6% helix, 52% strand | Q46TU1 |
| D | Uncharacterized protein with rmlc-like cupin fold | protein | 102 | 6% helix, 56% strand | Q46TU1 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 946 | 0.83 | 0.84 | 88 | empty |
| 2 | 72 | 0.48 | 0.82 | 15 | empty |
| 3 | 87 | 0.48 | 0.81 | 15 | empty |
| 4 | 87 | 0.47 | 0.80 | 17 | empty |
| 5 | 90 | 0.45 | 0.79 | 15 | empty |
Interfaces
6 interfaces between chains.
- A–B · 1447 Ų buried · 21 hydrogen bonds · protein-protein
- C–D · 1419 Ų buried · 19 hydrogen bonds · protein-protein
- A–D · 314 Ų buried · 4 hydrogen bonds · protein-protein
- B–C · 291 Ų buried · 2 hydrogen bonds · protein-protein
- B–D · 40 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3FJS · Crystal structure of a putative biosynthetic protein with rmlc-like cupin fold… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q46TU1
- Elsewhere: RCSB PDB 3FJS · PDBe 3FJS · UniProt Q46TU1
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