Research workbench
Crystal structure of the protein prib from bordetella parapertussis. northeast structural genomics consortium target BPR162.
Analyse Crystal structure of the protein prib from bordetella parapertussis. northeast… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FHW
- Type
- protein
- Length
- 200 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Primosomal replication protein N
- UniProt
- P67675
- Ligands
- NA
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Primosomal replication protein N | protein | 100 | 6% helix, 57% strand | P67675 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.34 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1359 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3FHW · Crystal structure of the protein priB from Bordetella parapertussis. Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00
- P67675 · AlphaFold monomer V2.0 prediction for primosomal replication protein N (P67675) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P67675
- Elsewhere: RCSB PDB 3FHW · PDBe 3FHW · UniProt P67675
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