Research workbench
Three-dimensional structure of two crystal forms of Fab R19.9, from a monoclonal anti-arsonate antibody
Analyse Three-dimensional structure of two crystal forms of Fab R19.9, from a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1FAI
- Type
- protein
- Length
- 435 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- IGG2B-kappa R19.9 Fab (light chain); IGG2B-kappa R19.9 Fab (heavy chain)
- UniProt
- P01837
- Pockets
- 3 · best druggability 0.47
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | IGG2B-kappa R19.9 Fab (light chain) | protein | 214 | 6% helix, 48% strand | P01837 |
| H | IGG2B-kappa R19.9 Fab (heavy chain) | protein | 221 | 5% helix, 43% strand | — |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 217 | 0.47 | 0.74 | 37 | empty |
| 2 | 111 | 0.42 | 0.77 | 21 | empty |
| 3 | 67 | 0.32 | 0.76 | 16 | empty |
Interfaces
1 interface between chains.
- L–H · 1909 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 1FAI · Three-dimensional structure of two crystal forms of Fab R19.9, from a monoclonal… · the same entry in another collection · chain L against L, TM-score 1.00
- P01837 · AlphaFold monomer V2.0 prediction for immunoglobulin kappa constant (P01837) · a predicted model of the same protein · chain L against A, TM-score 0.49
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01837
- Elsewhere: RCSB PDB 1FAI · PDBe 1FAI · UniProt P01837
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.