Research workbench
Crystal structure of the shutoff and exonuclease protein from kaposis sarcoma associated herpesvirus
Analyse Crystal structure of the shutoff and exonuclease protein from kaposis sarcoma… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FHD
- Type
- protein
- Length
- 456 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orf 37
- UniProt
- P88925
- Ligands
- MG, SO4
- Pockets
- 4 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Orf 37 | protein | 456 | 43% helix, 18% strand | P88925 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 196 | 0.50 | 0.76 | 32 | empty |
| 2 | 103 | 0.42 | 0.77 | 25 | empty |
| 3 | 133 | 0.42 | 0.76 | 28 | SO4 |
| 4 | 54 | 0.27 | 0.74 | 15 | empty |
Compared structures
- 3FHD · Crystal structure of the Shutoff and Exonuclease Protein from Kaposis Sarcoma Associated… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P88925
- Elsewhere: RCSB PDB 3FHD · PDBe 3FHD · UniProt P88925
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