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Putative tetrapyrrole (CORRIN/PORPHYRIN) methyltransferase from bacteroides fragilis.

Analyse Putative tetrapyrrole (CORRIN/PORPHYRIN) methyltransferase from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3FFY
Type: protein
Length: 112 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative tetrapyrrole (CORRIN/PORPHYRIN) methylase
UniProt: Q5LHP3
Ligands: SO4
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative tetrapyrrole (CORRIN/PORPHYRIN) methylase	protein	112	32% helix, 27% strand	Q5LHP3

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.36	0.80	15	empty

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

3FFY · Putative tetrapyrrole (corrin/porphyrin) methyltransferase from Bacteroides fragilis. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5LHP3
Elsewhere: RCSB PDB 3FFY · PDBe 3FFY · UniProt Q5LHP3

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