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Crystal structure of a SUSD/RAGB family protein (BT_2033) from bacteroides thetaiotaomicron vpi-5482 at 1.75 a resolution

Analyse Crystal structure of a SUSD/RAGB family protein (BT_2033) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3FDH
Type: protein
Length: 472 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Susd homolog
UniProt: Q8A653
Pockets: 4 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 58% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Susd homolog	protein	472	58% helix, 7% strand	Q8A653

Ligands and binding sites

PG4 · Tetraethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.38	0.76	22	empty
2	84	0.36	0.76	16	empty
3	51	0.28	0.75	12	PG4
4	50	0.25	0.73	17	empty

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

3FDH · Crystal structure of a susd/ragb family protein (bt_2033) from bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8A653
Elsewhere: RCSB PDB 3FDH · PDBe 3FDH · UniProt Q8A653

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