Research workbench
Crystal structure of dlta protein in complex with ATP and magnesium
Analyse Crystal structure of dlta protein in complex with ATP and magnesium in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3FCC
- Type
- protein
- Length
- 500 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-alanine--POLY(PHOSPHORIBITOL) ligase subunit 1
- EC
- 6.1.1.13
- UniProt
- Q81G39
- Ligands
- ATP, MG
- Pockets
- 2 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-alanine--POLY(PHOSPHORIBITOL) ligase subunit 1 (EC 6.1.1.13) | protein | 500 | 35% helix, 28% strand | Q81G39 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1034 | 0.80 | 0.82 | 108 | MG, ATP |
| 2 | 98 | 0.42 | 0.78 | 17 | empty |
Compared structures
- 3FCC · CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP and MAGNESIUM · the same entry in another collection · chain A against A, TM-score 1.00
- Q81G39 · AlphaFold monomer V2.0 prediction for D-alanine--D-alanyl carrier protein ligase (Q81G39) · a predicted model of the same protein · chain A against A, TM-score 0.82
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81G39
- Elsewhere: RCSB PDB 3FCC · PDBe 3FCC · UniProt Q81G39
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.