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Crystal structure of a putative polyketide cyclase (PP0894) from pseudomonas putida KT2440 at 1.24 a resolution

Analyse Crystal structure of a putative polyketide cyclase (PP0894) from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3F7X
Type: protein
Length: 133 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative polyketide cyclase
UniProt: Q88PF6
Ligands: UNL
Pockets: 1 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative polyketide cyclase	protein	133	32% helix, 43% strand	Q88PF6

Ligands and binding sites

UNL · Unknown ligand · ligand · 2 copies · chains A
EDO · 1,2-ethanediol · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	286	0.76	0.87	35	UNL, EDO

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

3F7X · Crystal structure of a putative polyketide cyclase (pp0894) from pseudomonas putida… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q88PF6
Elsewhere: RCSB PDB 3F7X · PDBe 3F7X · UniProt Q88PF6

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