Research workbench
MSMEG_3380 F420 reductase
Analyse MSMEG_3380 F420 reductase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3F7E
- Type
- protein
- Length
- 254 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pyridoxamine 5'-phosphate oxidase-related, FMN- binding
- UniProt
- A0QXP8
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 20% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyridoxamine 5'-phosphate oxidase-related, FMN- binding | protein | 128 | 20% helix, 41% strand | A0QXP8 |
| B | Pyridoxamine 5'-phosphate oxidase-related, FMN- binding | protein | 126 | 20% helix, 41% strand | A0QXP8 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 366 | 0.65 | 0.79 | 35 | empty |
| 2 | 301 | 0.63 | 0.80 | 30 | empty |
| 3 | 174 | 0.56 | 0.80 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 1192 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3F7E · MSMEG_3380 F420 Reductase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QXP8
- Elsewhere: RCSB PDB 3F7E · PDBe 3F7E · UniProt A0QXP8
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