Research workbench
Crystal structure of pseudomonas aeruginosa mlic in complex with hen egg white lysozyme
Analyse Crystal structure of pseudomonas aeruginosa mlic in complex with hen egg white… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3F6Z
- Type
- protein
- Length
- 444 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme C; Putative uncharacterized protein
- EC
- 3.2.1.17
- UniProt
- P00698, Q9I574
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Lysozyme C (EC 3.2.1.17) | protein | 129 | 44% helix, 12% strand | P00698 |
| B, D | Putative uncharacterized protein | protein | 93 | 0% helix, 68% strand | Q9I574 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 623 | 0.66 | 0.75 | 47 | empty |
| 2 | 87 | 0.42 | 0.79 | 17 | empty |
| 3 | 84 | 0.38 | 0.77 | 16 | empty |
Interfaces
5 interfaces between chains.
- B–D · 1280 Ų buried · 18 hydrogen bonds · protein-protein
- A–B · 985 Ų buried · 24 hydrogen bonds · protein-protein
- C–D · 979 Ų buried · 25 hydrogen bonds · protein-protein
- B–C · 123 Ų buried · 0 hydrogen bonds · protein-protein
- A–D · 120 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 disulfide (disulfide).
Compared structures
- 3F6Z · Crystal structure of Pseudomonas aeruginosa MliC in complex with hen egg white lysozyme · the same entry in another collection · chain A against A, TM-score 1.00
- Q9I574 · AlphaFold monomer V2.0 prediction for membrane-bound lysozyme inhibitor of C-type… · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Every structure of UniProt Q9I574
- Elsewhere: RCSB PDB 3F6Z · PDBe 3F6Z · UniProt P00698 · UniProt Q9I574
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