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Crystal structure of the FMN riboswitch bound to FMN, BA2+ soak.

Analyse Crystal structure of the FMN riboswitch bound to FMN, BA2+ soak. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3F2W
Type: RNA
Length: 109 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: FMN riboswitch
Ligands: FMN, BA, MG
Pockets: 6 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	FMN riboswitch	rna	109	—	—

Ligands and binding sites

FMN · Flavin mononucleotide · ligand · chains X
BA · Barium ion · metal · 16 copies · chains X
MG · Magnesium ion · metal · 7 copies · chains X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	904	0.74	0.79	44	FMN, BA
2	132	0.46	0.78	16	empty
3	139	0.37	0.73	16	MG, BA
4	51	0.29	0.77	14	BA
5	50	0.28	0.76	8	BA

Modifications

Observed in the structure: 2 modified (nucleotide modification).

Compared structures

3F2W · Crystal structure of the FMn riboswitch bound to FMN, Ba2+ soak. · the same entry in another collection · chain X against X, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3F2W · PDBe 3F2W

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