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Bacteriophage T4 GP17 motor assembly based on crystal structures and cryo-EM reconstructions

Analyse Bacteriophage T4 GP17 motor assembly based on crystal structures and cryo-EM… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3EZK
Type: protein
Length: 2,765 residues
Chains: 5
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA packaging protein GP17
UniProt: P17312
Pockets: 2 · best druggability 0.28

Structure

electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E	DNA packaging protein GP17	protein	553	0% helix, 0% strand	P17312

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	58	0.28	0.72	19	empty
2	58	0.28	0.72	21	empty

Interfaces

5 interfaces between chains.

D–E · 230 Å² buried · 0 hydrogen bonds · protein-protein
C–D · 229 Å² buried · 0 hydrogen bonds · protein-protein
A–E · 229 Å² buried · 0 hydrogen bonds · protein-protein
B–C · 228 Å² buried · 0 hydrogen bonds · protein-protein
A–B · 228 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

3EZK · Bacteriophage T4 gp17 motor assembly based on crystal structures and cryo-EM… · the same entry in another collection · chain C against C, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P17312
Elsewhere: RCSB PDB 3EZK · PDBe 3EZK · UniProt P17312

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