Research workbench
Crystal structure of the peptidyl-tRNA hydrolase AF2095 from archaeglobus fulgidis. northeast structural genomics consortium target GR4
Analyse Crystal structure of the peptidyl-tRNA hydrolase AF2095 from archaeglobus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3ERJ
- Type
- protein
- Length
- 227 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidyl-tRNA hydrolase
- EC
- 3.1.1.29
- UniProt
- O28185
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidyl-tRNA hydrolase (EC 3.1.1.29) | protein | 116 | 42% helix, 23% strand | O28185 |
| B | Peptidyl-tRNA hydrolase (EC 3.1.1.29) | protein | 111 | 41% helix, 23% strand | O28185 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.52 | 0.82 | 20 | empty |
| 2 | 64 | 0.30 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 952 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 3ERJ · Crystal structure of the peptidyl-tRNA hydrolase AF2095 from Archaeglobus fulgidis.… · the same entry in another collection · chain A against A, TM-score 1.00
- O28185 · AlphaFold monomer V2.0 prediction for peptidyl-tRNA hydrolase (O28185) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O28185
- Elsewhere: RCSB PDB 3ERJ · PDBe 3ERJ · UniProt O28185
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