Research workbench
Model of TRNA(TRP)-ef-tu in the ribosomal pre-accommodated state revealed by cryo-EM
Analyse Model of TRNA(TRP)-ef-tu in the ribosomal pre-accommodated state revealed by… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3EQ3
- Type
- protein
- Length
- 657 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Elongation factor tu; 30S ribosomal protein S12; 50S ribosomal protein L11
- UniProt
- P0A6N1, P0A7S3, P0A7J7
- Pockets
- 4 · best druggability 0.48
Structure
electron microscopy · 3 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Elongation factor tu | protein | 393 | 0% helix, 0% strand | P0A6N1 |
| L | 30S ribosomal protein S12 | protein | 123 | 0% helix, 0% strand | P0A7S3 |
| I | 50S ribosomal protein L11 | protein | 141 | 0% helix, 0% strand | P0A7J7 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 203 | 0.48 | 0.73 | 47 | empty |
| 2 | 106 | 0.39 | 0.73 | 30 | empty |
| 3 | 91 | 0.37 | 0.74 | 26 | empty |
| 4 | 66 | 0.33 | 0.74 | 20 | empty |
Compared structures
- 3EQ3 · Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A6N1
- Every structure of UniProt P0A7S3
- Every structure of UniProt P0A7J7
- Elsewhere: RCSB PDB 3EQ3 · PDBe 3EQ3 · UniProt P0A6N1 · UniProt P0A7S3 · UniProt P0A7J7
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