Research workbench
X-ray structure of protein from arabidopsis thaliana AT1G79260 with bound heme
Analyse X-ray structure of protein from arabidopsis thaliana AT1G79260 with bound heme in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3EMM
- Type
- protein
- Length
- 153 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein AT1G79260
- UniProt
- O64527
- Ligands
- HEM
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 66% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein AT1G79260 | protein | 153 | 4% helix, 66% strand | O64527 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 202 | 0.54 | 0.78 | 27 | HEM |
Compared structures
- 3EMM · X-ray structure of protein from Arabidopsis thaliana AT1G79260 with Bound Heme · the same entry in another collection · chain A against A, TM-score 1.00
- O64527 · AlphaFold monomer V2.0 prediction for UPF0678 fatty acid-binding protein-like protein… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O64527
- Elsewhere: RCSB PDB 3EMM · PDBe 3EMM · UniProt O64527
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