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Solution structure of RNase P RNA (M1 RNA) P4 stem C70U mutant oligoribonucleotide complexed with COBALT(III) hexammine, NMR, minimized average structure
Analyse Solution structure of RNase P RNA (M1 RNA) P4 stem C70U mutant… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1F79
- Type
- RNA
- Length
- 27 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNase P RNA ribozyme, P4 domain mutant
- Ligands
- NCO
- Pockets
- 1 · best druggability 0.55
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNase P RNA ribozyme, P4 domain mutant | rna | 27 | — | — |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 290 | 0.55 | 0.77 | 18 | NCO |
Compared structures
- 1F79 · Solution structure of RNase P RNA (M1 RNA) P4 stem C70U mutant oligoribonucleotide… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1F79 · PDBe 1F79
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