Research workbench
Structure of B-DNA D(CGTTAATTAACG)2 in the presence of manganese
Analyse Structure of B-DNA D(CGTTAATTAACG)2 in the presence of manganese in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3EIL
- Type
- DNA
- Length
- 66 nucleotides
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'- D(*DCP*DGP*DTP*DTP*DAP*DAP*DTP*DTP*DAP*DAP*DCP*DG)-3'
- Ligands
- MN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | 5'- D(*DCP*DGP*DTP*DTP*DAP*DAP*DTP*DTP*DAP*DAP*DCP*DG)-3' | dna | 11 | — | — |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 7 copies · chains A, B, D, C, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
4 interfaces between chains.
- C–D · 482 Ų buried · 35 hydrogen bonds · nucleic-nucleic
- E–F · 481 Ų buried · 36 hydrogen bonds · nucleic-nucleic
- A–B · 476 Ų buried · 35 hydrogen bonds · nucleic-nucleic
- B–D · 18 Ų buried · 0 hydrogen bonds · nucleic-nucleic
Compared structures
- 3EIL · Structure of B-DNA d(CGTTAATTAACG)2 in the presence of Manganese · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3EIL · PDBe 3EIL
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