Research workbench

Structure of the alcaligin outer membrane recepteur faua from bordetella pertussis

Analyse Structure of the alcaligin outer membrane recepteur faua from bordetella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3EFM
Type: protein
Length: 572 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ferric alcaligin siderophore receptor
UniProt: Q9X6A5
Ligands: SO4
Pockets: 7 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 64% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ferric alcaligin siderophore receptor	protein	572	5% helix, 64% strand	Q9X6A5

Ligands and binding sites

SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.76	0.99	25	empty
2	703	0.71	0.78	76	empty
3	648	0.70	0.78	54	empty
4	309	0.68	0.83	55	empty
5	317	0.61	0.78	45	empty

Compared structures

3EFM · Structure of the alcaligin outer membrane recepteur FauA from Bordetella pertussis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X6A5
Elsewhere: RCSB PDB 3EFM · PDBe 3EFM · UniProt Q9X6A5

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.