Research workbench
Crystal structure of putative acetyltransferase from the gnat family (YP_497011.1) from novosphingobium aromaticivorans dsm 12444 at 1.80 a resolution
Analyse Crystal structure of putative acetyltransferase from the gnat family… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3EC4
- Type
- protein
- Length
- 447 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative acetyltransferase from the gnat family
- UniProt
- Q2G7J6
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 28% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative acetyltransferase from the gnat family | protein | 224 | 28% helix, 33% strand | Q2G7J6 |
| B | Putative acetyltransferase from the gnat family | protein | 223 | 29% helix, 34% strand | Q2G7J6 |
Ligands and binding sites
- ACT · Acetate ion · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1002 | 0.83 | 0.84 | 105 | empty |
Interfaces
1 interface between chains.
- A–B · 838 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 3EC4 · Crystal structure of Putative Acetyltransferase from the GNAT family (YP_497011.1) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2G7J6
- Elsewhere: RCSB PDB 3EC4 · PDBe 3EC4 · UniProt Q2G7J6
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