Research workbench
Novel dimerization motif in the dead box RNA helicase hera: form 1, complete dimer, asymmetric
Analyse Novel dimerization motif in the dead box RNA helicase hera: form 1, complete… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3EAS
- Type
- protein
- Length
- 415 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hera
- UniProt
- Q72GF3
- Pockets
- 2 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hera | protein | 206 | 52% helix, 14% strand | Q72GF3 |
| B | Hera | protein | 209 | 51% helix, 16% strand | Q72GF3 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.50 | 0.85 | 15 | empty |
| 2 | 93 | 0.43 | 0.79 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 1620 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 3EAS · Novel dimerization motif in the DEAD box RNA helicase Hera: form 1, complete dimer… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72GF3
- Elsewhere: RCSB PDB 3EAS · PDBe 3EAS · UniProt Q72GF3
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