Research workbench
Crystal structure of the protein Q8E9M7 from shewanella oneidensis related to thioesterase superfamily. northeast structural genomics consortium target SOR246.
Analyse Crystal structure of the protein Q8E9M7 from shewanella oneidensis related to… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3E8P
- Type
- protein
- Length
- 612 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q8E9M7
- Pockets
- 4 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Uncharacterized protein | protein | 153 | 37% helix, 36% strand | Q8E9M7 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 492 | 0.77 | 0.85 | 44 | empty |
| 2 | 472 | 0.76 | 0.84 | 45 | empty |
| 3 | 492 | 0.75 | 0.83 | 39 | empty |
| 4 | 494 | 0.75 | 0.83 | 47 | empty |
Interfaces
6 interfaces between chains.
- B–D · 1264 Ų buried · 17 hydrogen bonds · protein-protein
- A–C · 1233 Ų buried · 14 hydrogen bonds · protein-protein
- A–B · 661 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 648 Ų buried · 8 hydrogen bonds · protein-protein
- B–C · 447 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 modified (engineered).
Compared structures
- 3E8P · Crystal structure of the protein Q8E9M7 from Shewanella oneidensis related to… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8E9M7
- Elsewhere: RCSB PDB 3E8P · PDBe 3E8P · UniProt Q8E9M7
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