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Crystal structure of D-alanine-D-alanine ligase from xanthomonas oryzae pv. oryzae KACC10331
Analyse Crystal structure of D-alanine-D-alanine ligase from xanthomonas oryzae pv.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3E5N
- Type
- protein
- Length
- 340 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D-alanine-D-alanine ligase a
- UniProt
- Q2P8P8
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-alanine-D-alanine ligase a | protein | 340 | 34% helix, 27% strand | Q2P8P8 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 361 | 0.63 | 0.78 | 50 | empty |
| 2 | 51 | 0.43 | 0.84 | 13 | empty |
| 3 | 76 | 0.37 | 0.77 | 14 | empty |
Compared structures
- 3E5N · Crystal structure of D-alanine-D-alanine ligase from Xanthomonas oryzae pv. oryzae… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2P8P8
- Elsewhere: RCSB PDB 3E5N · PDBe 3E5N · UniProt Q2P8P8
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