Research workbench
Crystal structure of TM1382, a putative nudix hydrolase
Analyse Crystal structure of TM1382, a putative nudix hydrolase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3E57
- Type
- protein
- Length
- 363 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein TM1382
- UniProt
- Q9X1A2
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein TM1382 | protein | 180 | 38% helix, 41% strand | Q9X1A2 |
| B | Uncharacterized protein TM1382 | protein | 183 | 34% helix, 40% strand | Q9X1A2 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 660 | 0.72 | 0.79 | 65 | empty |
| 2 | 138 | 0.54 | 0.81 | 22 | empty |
| 3 | 91 | 0.51 | 0.83 | 18 | empty |
| 4 | 251 | 0.49 | 0.74 | 33 | empty |
Interfaces
1 interface between chains.
- A–B · 675 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 3E57 · Crystal structure of Tm1382, a putative Nudix hydrolase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X1A2
- Elsewhere: RCSB PDB 3E57 · PDBe 3E57 · UniProt Q9X1A2
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