Research workbench

The structure of RV0554 from mycobacterium tuberculosis

Analyse The structure of RV0554 from mycobacterium tuberculosis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3E3A
Type: protein
Length: 549 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Possible peroxidase bpoc
EC: 1.11.1.-
UniProt: O06420
Pockets: 3 · best druggability 0.85

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Possible peroxidase bpoc (EC 1.11.1.-)	protein	274	45% helix, 17% strand	O06420
B	Possible peroxidase bpoc (EC 1.11.1.-)	protein	275	46% helix, 17% strand	O06420

Ligands and binding sites

ACT · Acetate ion · additive · 2 copies · chains A, B
MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	691	0.85	0.88	59	empty
2	700	0.84	0.87	60	MPD
3	73	0.74	0.98	23	empty

Interfaces

1 interface between chains.

A–B · 1802 Å² buried · 22 hydrogen bonds · protein-protein

Compared structures

3E3A · The Structure of Rv0554 from Mycobacterium tuberculosis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O06420
Elsewhere: RCSB PDB 3E3A · PDBe 3E3A · UniProt O06420

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.