Research workbench
X-ray structure of the protein Q7WE92_BORBR from thioesterase superfamily. northeast structural genomics consortium target BOR214A.
Analyse X-ray structure of the protein Q7WE92_BORBR from thioesterase superfamily.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3E29
- Type
- protein
- Length
- 534 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein Q7WE92_BORBR
- UniProt
- Q7WE92
- Pockets
- 6 · best druggability 0.70
Structure
x-ray diffraction · 4 distinct chains · 30% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein Q7WE92_BORBR | protein | 134 | 30% helix, 37% strand | Q7WE92 |
| B | Uncharacterized protein Q7WE92_BORBR | protein | 135 | 29% helix, 38% strand | Q7WE92 |
| C | Uncharacterized protein Q7WE92_BORBR | protein | 133 | 29% helix, 38% strand | Q7WE92 |
| D | Uncharacterized protein Q7WE92_BORBR | protein | 132 | 30% helix, 39% strand | Q7WE92 |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 351 | 0.70 | 0.83 | 42 | empty |
| 2 | 346 | 0.70 | 0.83 | 39 | empty |
| 3 | 356 | 0.69 | 0.82 | 41 | empty |
| 4 | 323 | 0.68 | 0.82 | 38 | empty |
| 5 | 108 | 0.39 | 0.76 | 20 | empty |
Interfaces
6 interfaces between chains.
- C–D · 1205 Ų buried · 20 hydrogen bonds · protein-protein
- A–B · 1192 Ų buried · 19 hydrogen bonds · protein-protein
- B–C · 586 Ų buried · 5 hydrogen bonds · protein-protein
- A–D · 535 Ų buried · 6 hydrogen bonds · protein-protein
- B–D · 340 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 22 modified (engineered).
Compared structures
- 3E29 · X-Ray structure of the protein Q7WE92_BORBR from thioesterase superfamily. Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WE92
- Elsewhere: RCSB PDB 3E29 · PDBe 3E29 · UniProt Q7WE92
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