Research workbench
Crystal structure of a putative metal-dependent phosphoesterase (BAD_1165) from bifidobacterium adolescentis atcc 15703 at 2.40 a resolution
Analyse Crystal structure of a putative metal-dependent phosphoesterase (BAD_1165) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3E0F
- Type
- protein
- Length
- 286 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative metal-dependent phosphoesterase
- UniProt
- A1A2L3
- Ligands
- FE, ZN, PO4
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative metal-dependent phosphoesterase | protein | 286 | 41% helix, 17% strand | A1A2L3 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 2 copies · chains A
- ZN · Zinc ion · metal · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 535 | 0.72 | 0.81 | 57 | FE, PO4 |
| 2 | 82 | 0.33 | 0.74 | 16 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3E0F · Crystal structure of a putative metal-dependent phosphoesterase (bad_1165) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1A2L3
- Elsewhere: RCSB PDB 3E0F · PDBe 3E0F · UniProt A1A2L3
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