Research workbench
Crystal structure of a NTF2-like protein of unknown function (MFLA_0564) from methylobacillus flagellatus kt at 2.200 a resolution
Analyse Crystal structure of a NTF2-like protein of unknown function (MFLA_0564) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DUK
- Type
- protein
- Length
- 750 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NTF2-like protein of unknown function
- UniProt
- Q1H3V3
- Ligands
- CL
- Pockets
- 5 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | NTF2-like protein of unknown function | protein | 125 | 30% helix, 46% strand | Q1H3V3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 247 | 0.81 | 0.94 | 55 | EDO |
| 2 | 187 | 0.43 | 0.74 | 28 | empty |
| 3 | 138 | 0.42 | 0.75 | 21 | empty |
| 4 | 139 | 0.42 | 0.75 | 22 | empty |
| 5 | 97 | 0.36 | 0.75 | 27 | empty |
Interfaces
9 interfaces between chains.
- A–D · 1419 Ų buried · 11 hydrogen bonds · protein-protein
- E–F · 1408 Ų buried · 13 hydrogen bonds · protein-protein
- B–C · 1402 Ų buried · 11 hydrogen bonds · protein-protein
- B–D · 770 Ų buried · 14 hydrogen bonds · protein-protein
- A–C · 708 Ų buried · 13 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 modified (engineered).
Compared structures
- 3DUK · Crystal structure of a NTF2-like protein of unknown function (MFLA_0564) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1H3V3
- Elsewhere: RCSB PDB 3DUK · PDBe 3DUK · UniProt Q1H3V3
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