Research workbench
HIV-1 capsid C-terminal domain mutant (E187A)
Analyse HIV-1 capsid C-terminal domain mutant (E187A) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3DTJ
- Type
- protein
- Length
- 292 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 capsid protein
- UniProt
- Q72497
- Pockets
- 4 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | HIV-1 capsid protein | protein | 73 | 66% helix, 0% strand | Q72497 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 158 | 0.48 | 0.77 | 24 | empty |
| 2 | 53 | 0.41 | 0.82 | 18 | empty |
| 3 | 62 | 0.34 | 0.77 | 17 | empty |
| 4 | 50 | 0.34 | 0.79 | 18 | empty |
Interfaces
4 interfaces between chains.
- C–D · 802 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 793 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 506 Ų buried · 6 hydrogen bonds · protein-protein
- B–C · 42 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3DTJ · HIV-1 capsid C-terminal domain mutant (E187A) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72497
- Elsewhere: RCSB PDB 3DTJ · PDBe 3DTJ · UniProt Q72497
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